Browsing by Author "Behrendt, Benjamin"

Now showing 1 - 6 of 6
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    2.5D Geometric Mapping of Aortic Blood Flow Data for Cohort Visualization
    (The Eurographics Association, 2021) Behrendt, Benjamin; Pleuss-Engelhardt, David; Gutberlet, Matthias; Preim, Bernhard; Oeltze-Jafra, Steffen and Smit, Noeska N. and Sommer, Björn and Nieselt, Kay and Schultz, Thomas
    Four-dimensional phase-contrast magnetic resonance imaging (4D PC-MRI) allows for a non-invasive acquisition of timeresolved blood flow measurements, providing a valuable aid to clinicians and researchers seeking a better understanding of the interrelation between pathologies of the cardiovascular system and changes in blood flow patterns. Such research requires extensive analysis and comparison of blood flow data within and between different patient cohorts representing different age groups, genders and pathologies. However, a direct comparison between large numbers of datasets is not feasible due to the complexity of the data. In this paper, we present a novel approach to normalize aortic 4D PC-MRI datasets to enable qualitative and quantitative comparisons. We define normalized coordinate systems for the vessel surface as well as the intravascular volume, allowing for the computation of quantitative measures between datasets for both hemodynamic surface parameters as well as flow or pressure fields. To support the understanding of the geometric deformations involved in this process, individual transformations can not only be toggled on or off, but smoothly transitioned between anatomically faithful and fully abstracted states. In an informal interview with an expert radiologist, we confirm the usefulness of our technique. We also report on initial findings from exploring a database of 138 datasets consisting of both patient and healthy volunteers.
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    Automatic Animations to Analyze Blood Flow Data
    (The Eurographics Association, 2021) Apilla, Vikram; Behrendt, Benjamin; Lawonn, Kai; Preim, Bernhard; Meuschke, Monique; Oeltze-Jafra, Steffen and Smit, Noeska N. and Sommer, Björn and Nieselt, Kay and Schultz, Thomas
    We present an approach for computing camera animations composed of optimal views to support the visual exploration of blood flow data using cerebral aneurysms as major example. Medical researchers are interested in hemodynamic parameters and vessel wall characteristics. The time-dependent character of blood flow data complicates the visual analysis. Our approach is modeled as an optimization problem to automatically determine camera paths during the cardiac cycle. These consist of optimal viewpoints showing regions with suspicious characteristics of wall- and flow-related parameters. This provides medical researchers with an efficient method of obtaining a fast overview of patient-specific blood flow data.
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    Evolutionary Pathlines for Blood Flow Exploration in Cerebral Aneurysms
    (The Eurographics Association, 2019) Behrendt, Benjamin; Engelke, Wito; Berg, Philipp; Beuing, Oliver; Preim, Bernhard; Hotz, Ingrid; Saalfeld, Sylvia; Kozlíková, Barbora and Linsen, Lars and Vázquez, Pere-Pau and Lawonn, Kai and Raidou, Renata Georgia
    Blood flow simulations play an important role for the understanding of vascular diseases, such as aneurysms. However, analysis of the resulting flow patterns, especially comparisons across patient groups, are challenging. Typically, the hemodynamic analysis relies on trial and error inspection of the flow data based on pathline visualizations and surface renderings. Visualizing too many pathlines at once may obstruct interesting features, e.g., embedded vortices, whereas with too little pathlines, particularities such as flow characteristics in aneurysm blebs might be missed. While filtering and clustering techniques support this task, they require the pre-computation of pathlines densely sampled in the space-time domain. Not only does this become prohibitively expensive for large patient groups, but the results often suffer from undersampling artifacts. In this work, we propose the usage of evolutionary algorithms to reduce the overhead of computing pathlines that do not contribute to the analysis, while simultaneously reducing the undersampling artifacts. Integrated in an interactive framework, it efficiently supports the evaluation of hemodynamics for clinical research and treatment planning in case of cerebral aneurysms. The specification of general optimization criteria for entire patient groups allows the blood flow data to be batch-processed. We present clinical cases to demonstrate the benefits of our approach especially in presence of aneurysm blebs. Furthermore, we conducted an evaluation with four expert neuroradiologists. As a result, we report advantages of our method for treatment planning to underpin its clinical potential.
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    A Framework for Visual Comparison of 4D PC-MRI Aortic Blood Flow Data
    (The Eurographics Association, 2018) Behrendt, Benjamin; Ebel, Sebastian; Gutberlet, Matthias; Preim, Bernhard; Puig Puig, Anna and Schultz, Thomas and Vilanova, Anna and Hotz, Ingrid and Kozlikova, Barbora and Vázquez, Pere-Pau
    Four-dimensional phase-contrast magnetic resonance imaging (4D PC-MRI) allows for the non-invasive acquisition of in-vivo blood flow, producing a patient-specific blood flow model in selected vascular structures, e.g. the aorta. In the past, many specialized techniques for the visualization and exploration of such datasets have been developed, yet a tool for the visual comparison of multiple datasets is missing. Due to the complexity of the underlying data, a simple side-by-side comparison of two datasets using traditional visualization techniques can only yield coarse results. In this paper, we present a toolkit that allows for an efficient and robust registration of different 4D PC-MRI datasets and offers a variety of both qualitative and quantitative comparison techniques. Differences in the segmentation and time frame can be amended semi-automatically using landmarks on the vessel centerline and flow curve of the datasets. A set of measures quantifying the difference between the datasets, such as the flow jet displacement or flow angle and velocity difference, is automatically computed. To support the orientation in the spatio-temporal domain of the flow dataset, we provide bulls-eye plots that highlight potentially interesting regions. In an evaluation with three experienced radiologists, we confirmed the usefulness of our technique. With our application, they were able to discover previously unnoticed artifacts occurring in a dataset acquired with an experimental MRI sequence.
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    The Virtual Reality Flow Lens for Blood Flow Exploration
    (The Eurographics Association, 2020) Behrendt, Benjamin; Piotrowski, Lisa; Saalfeld, Sylvia; Preim, Bernhard; Saalfeld, Patrick; Kozlíková, Barbora and Krone, Michael and Smit, Noeska and Nieselt, Kay and Raidou, Renata Georgia
    The exploration of time-dependent measured or simulated blood flow is challenging due to the complex three-dimensional structure of vessels and blood flow patterns. Especially on a 2D screen, understanding their full shape and interacting with them is difficult. Critical regions do not always stand out in the visualization and may easily be missed without proper interaction and filtering techniques. The FlowLens [GNBP11] was introduced as a focus-and-context technique to explore one specific blood flow parameter in the context of other parameters for the purpose of treatment planning. With the recent availability of affordable VR glasses it is possible to adapt the concepts of the FlowLens into immersive VR and make them available to a broader group of users. Translating the concept of the Flow Lens to VR leads to a number of design decisions not only based around what functions to include, but also how they can be made available to the user. In this paper, we present a configurable focus-and-context visualization for the use with virtual reality headsets and controllers that allows users to freely explore blood flow data within a VR environment. The advantage of such a solution is the improved perception of the complex spatial structures that results from being surrounded by them instead of observing through a small screen.
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    Visual Exploration of Intracranial Aneurysm Blood Flow Adapted to the Clinical Researcher
    (The Eurographics Association, 2021) Behrendt, Benjamin; Engelke, Wito; Berg, Philipp; Beuing, Oliver; Hotz, Ingrid; Preim, Bernhard; Saalfeld, Sylvia; Oeltze-Jafra, Steffen and Raidou, Renata Georgia
    Rupture risk assessment is a key to devise patient-specific treatment plans of cerebral aneurysms. To understand and predict the development of aneurysms and other vascular diseases over time, both hemodynamic flow patterns and their effect on the vessel surface need to be analyzed. Flow structures close to the vessel wall often correlate directly with local changes in surface parameters, such as pressure or wall shear stress. However, especially for the identification of specific blood flow characteristics that cause local startling parameters on the vessel surface, like elevated pressure values, an interactive analysis tool is missing. In order to find meaningful structures in the entirety of the flow, the data has to be filtered based on the respective explorative aim. Thus, we present a combination of visualization, filtering and interaction techniques for explorative analysis of blood flow with a focus on the relation of local surface parameters and underlying flow structures. In combination with a filtering-based approach, we propose the usage of evolutionary algorithms to reduce the overhead of computing pathlines that do not contribute to the analysis, while simultaneously reducing the undersampling artifacts. We present clinical cases to demonstrate the benefits of both our filter-based and evolutionary approach and showcase its potential for patient-specific treatment plans.